Tag Archives: R scripts

Arctic Amplification – November, 2013: Updated 12/20/13

Updated (bold italic) 12/20/13 to reflect comments from David. 

NASA’s GISS temperature anomaly map (link) for November, 2013 is reproduced  below. It uses a 2×2 degree grid cell for the globe. 

GISS_anom_map_11_13

The November, 2013 GISS temperature anomaly shows the critical global pattern that is important to recognize because it is fundamental to understanding why global warming is so dangerous.

First, the overall global anomaly for November, 2013 was 0.77 degrees C.  The 2 degree latitude zone mean anomaly varied from a low of 0.068 to a high of 2.33. So the mean global anomaly does not tell the full story, we need to look at the geographical distribution to really understand the global warming pattern.

As we examine the geographical distribution of the November, 2013 anomalies, we see that they tend to increase as we move from the equator toward the poles.  This pattern,  called polar amplification, means that the polar regions, particularly the Arctic region, warms much more rapidly than the overall global mean.

I developed this chart in R to display the mean zonal anomalies by 2 degree latitude zones to help me visualize the November, 2013 anomaly patterns.

art_amp

Here is the R Script that I used to produce the chart.
#### GISS Temperature Anomaly - Zonal mean by 2 degree latitude
##K O'Day, Dec. 18, 2013
##############################################################################################################################
 link <- c("http://data.giss.nasa.gov/tmp/gistemp/NMAPS/tmp_GHCN_GISS_ERSST_1200km_Anom11_2013_2013_1951_1980/nmaps_zonal.txt")
 mon <- "November, 2013"
 title <- paste("Mean Temperature Anomaly by 2 Degree Latitude Zones\n", mon, sep="" )
 note_1 <- "GISS Temperature Anomaly\n (1951-1980 base period)"
 df <- read.table(link, skip=4)
 par(las=1, oma=c(3,1,1,1), mar=c(5,5,3,1), ps=11)
 names(df)<- c("Zone", "Anom")
 #png(file="C://R_Home//Charts & Graphs Blog//RClimateTools//a_Revised_Blog//art_amp.png", bg="white")

 plot(df$Anom, df$Zone, xlim=c(0,3), ylim=c(-90,90), type="l", axes=F, xlab="Mean Anomaly for Zone - C",
      ylab = "Latitude",  xaxs="i", yaxs = "i", main=title)
   axis(1, at=NULL)
   axis(2, at=c(-90,-60,-30,0,30,60,90))
   abline(h=40, col="green")
   abline(h=0, col="darkgrey")
   abline(v=0.77,col = "black" )
   abline(h=64, col="blue")
   text(2.5, 43.5, "Philadelphia, Pa.", cex=0.7)
   text(2.7, 67, "Reykjavík, Iceland", cex=0.7)
   text(2.25, -20, note_1, cex=0.75, adj=0)
   rect(0.6,-65,0.85 , -50, col = "white", border = "white")
   text(0.77, -60, "Global Mean @ \n0.77 C", cex=0.7)
 mtext("D Kelly O'Day - http://chartsgraphs.wordpress.com", 1,1, adj = 0, cex = 0.8, outer=T)
 mtext(format(Sys.time(), "%m/%d/ %Y"), 1, 1, adj = 1, cex = 0.8, outer=T)
# dev.off()

Animated Images of Arctic Sea Ice Extent Decline

This post shows how to download and animate a series of Arctic Sea Ice Extent images using R and the animation package.

Continue reading

R Script to Build Animation of Arctic Sea Ice Extent – Update 12/20/13

In my previous post I showed an animation of Arctic Sea Ice Extent from the 1980’s through August, 2012 (link).  In this post, I show how to build this Arctic Sea ice Extent  animated chart.

Source Data

The Arctic Ice Sea Monitor (link)   updates their daily csv file with the latest satellite based arctic sea ice measurements.  Here is the daily csv file link.

R script

To develop my animation of the daily Arctic Sea Ice extent, I decided to produce a plot for each year that showed the current year in red and the previous years in grey.  I go this idea from Tamino at Open Mind.

Here is my R script:
Be sure to set your working directory to appropriate location!!

library(animation)
  ani.options(convert=shQuote('C:\\Program Files (x86)\\ImageMagick-6.7.9-Q16\\convert.exe'))
## Use setwd() to specify directory where you want png images to be saved
  setwd("<strong>C:\\R_Home\\Charts & Graphs Blog\\RClimateTools\\Arctic_sea-ice_extent</strong><em>")
# use png_yn to toggle between plot output to png file or screen
  png_yn <- "y"
# Establish chart series patterns and colors to be able to distinguish current yr from previous years in plot
  pattern <- c(rep("dashed", 5), rep("solid", 12))
  ser_col <- c(rep("black",5),rep("grey",12))
# Establish chart annotations for date, chart title,
  what_date <- format(Sys.Date(), "%b %d, %Y")  # with month as a word
  title <- paste("IARC-JAXA Daily Arctic Sea Ice Extent*\n", what_date)
  note_1 <- "*Extent - Area of Ocean with at least 15% Sea Ice"
  par(oma=c(2,1,1,1)); par(mar=c(2,4,2,1))
#  Day of year axis setup
## Set up basic day of year vectors (mon_names, 1st day of mon)
  mon_names <- c("Jan", "Feb", "Mar", "April", "May", "June", "July", "Aug", "Sept", "Oct","Nov","Dec")
  mon_doy <- c(1,32,60,91,121,151,182,213,244,274,305,335,366)
  mon_pos <- c(16, 46, 75, 106,135, 165, 200, 228, 255, 289, 320, 355)
# Read JAXA Arctic Sea ice Extent csv file
# Data File: Month,Day,1980's Avg,1990's Avg,2000's Average,2002:2012
  link <- "http://www.ijis.iarc.uaf.edu/seaice/extent/plot.csv"
  j_data <- read.csv(link, header = F, skip=1, na.strings = c(-9999))
 series_id <-  c("mo", "day", "1980s", "1990s", "2000s","2002", "2003", "2004", "2005", "2006", "2007", "2008", "2009",
                "2010", "2011", "2012", "2013")
 colnames(j_data) <- series_id
# File has data for each day in 366 day year
# Establish Day of year
  for (i in 1:366)   j_data$yr_frac[i] <- i
    #convert ASIE to millions Km^2
   j_data[,c(3:17)] <- j_data[,c(3:17)]/1000000
# Loop through years
   for (j in 3:17)
  {
     png_name <- paste("asie",series_id[j],".png",sep="")
      if (png_yn =="y") png(filename=png_name)
      which_yr <- j
      no_yrs <- j
  # Calc min asie for year
    min_asie <- min(j_data[,j], na.rm = T)  # must remove na's to get valid answer
    lab_asie <- round(min_asie,3)
    min_r <- which(j_data[,j] == min_asie)
    min_d <- j_data[min_r,2]
    min_m <- j_data[min_r,1]
    min_date <- paste(min_m,"/",min_d,"/",series_id[j], sep="")
    plot(j_data[,17],  type="n", col = "grey",axes=F, xlab="",
       ylab="Arctic Sea Ice Extent - Millions Sq KM",
       ylim=c(0,15),xaxs="i", yaxs = "i",
       main=title)
    text(20, 1.5, note_1, cex = 0.8, adj=0, col = "black")
    text(20,1,"Data Source: http://www.ijis.iarc.uaf.edu/seaice/extent/plot.csv", cex = 0.8, adj=0,col = "black")
    mtext("D Kelly O'Day - http://chartsgraphs.wordpress.com", 1,0.5, adj = 0, cex = 0.8, outer=T)
  # custom x & y axes
    axis(side = 1, at=mon_doy, labels=F, xaxs="i")
    axis(side=1, at= mon_pos, labels=mon_names, tick=F, line=F, xaxs="i")
    axis(side=2,  yaxs="i", las=1)
    points(70, min_asie, col = "red",pch=19, cex = 2)
  # Add each previous yr data series as light grey line
  for (n in 3:no_yrs)
  {
    points(j_data[,18], j_data[,n], type="l",lwd=1,lty=pattern[j], col=ser_col[j])
    text(182,14,series_id[j], col = "red", cex = 1.1)
  }
  points(j_data[,18], j_data[,j], col="red", type="l",lwd=2.5)
  text(182,14,series_id[j], col = "red", cex = 1.1)
  text(120,min_asie+0.5, min_date, col="red", cex=0.9)
  text(120,min_asie, lab_asie, col="red", cex=0.9)
  if(png_yn == "y") dev.off()
}
## copy last png file 3 times to provide pause in animation
if(png_yn== "y")
{
  for (c in 1:2)
  {
    file_name <- paste("asie2012",c, ".png",sep="")
    file.copy(from= "asie2012.png", to = file_name, overwrite=T)
  }
  ani.options(outdir = getwd())    # direct gif output file to working dir
  ani.options(interval= 0.80)
  im.convert("asie*.png", "last_animation.gif")
}

Comparison of UAH and RSS Time Series with Common Baseline

In this post I set both UAH 5.4 and RSS 3.3 global temperature anomaly series to a common baseline period (1981-2010)  to compare them. Since both the UAH 5.4 and RSS 3.3 series are satellite based , they exhibit striking similarities.

Common Baseline

In this previous post, I showed how to convert temperature anomaly time series from one baseline period to another period.  I then used this technique in this post to directly compare UAH 5.4 (baseline 1981-2010) and GISS.

In this post, I compare the satellite based UAH 5.4 (baseline 1981-2010) and RSS 3.3 (baseline 1979-1998) series.

The offsets are as follows:

  • UAH:  -0.000978
  • RSS:      0.098772

Since the UAH TLT 5.4 series is based on a 1981-2010 baseline, the offset is nearly zero (-0.00098 versus 0.0). The RSS offset changes the baseline from 1979-1998 to 1981-2010.

Users can reproduce my analysis on their own by downloading my CTS.csv file and applying the offsets to the UAH and RSS series.

Comparison of 1981-2010 Baseline Series

Here is a plot of UAH and RSS 12 month moving averages for 1979 to current: Click to Enlarge

Continue reading

Comparison of UAH and GISS Time Series with Common Baseline

In this post I set both UAH and GISS global temperature anomaly series to a common baseline period (1981-2010)  and compare them. Even though the UAH series is satellite based and GISS series is station based, the series exhibit striking similarities.

Common Baseline

In this previous post, I showed how to convert temperature anomaly time series from one baseline period to another period.  I use this technique in this post to directly compare UAH (baseline 1981-2010) and GISS (baseline 1951-1980) series.

The offsets are as follows:

  • UAH:  -0.000978
  • GISS: 0.34958

Since the UAH TLT 5.4 series is based on a 1981-2010 baseline, the offset is nearly zero (-0.00098 versus 0.0).

Users can reproduce my analysis on their own by downloading my CTS.csv file and applying the offsets to the UAH and GISS series.

Comparison of 1981-2010 Baseline Series

Here is a plot of UAH and GISS 12 month moving averages for 1979 to current: Click to Enlarge Continue reading

UAH Temperature Anomalies Following Predictable Pattern

In this post I show one simple  and 2 multiple regression models to assess the role of time, El Nino – La Nina SSTA and volcanic activity (SATO) on UAH global temperature anomaly trends. The 3rd model provides a reasonable  approximation of the actual UAH oscillations over the 1979 – Feb, 2011 period.

Click Image to Enlarge

This analysis is similar to previous temperature anomaly regressions (here, here, here) that I have done.

The simple trend line regression shows the overall trend is upward, however, there are several oscillations that the linear trend misses.  The yr_frac and Nino34 regression improves on the linear model, however, it undershoots in the early 1980s,  overshoots in the 1992-1994 period, periods following significant volcanic activity.

The yr_frac, Nino34 and SATO model improves the fit in the early 1980s and 1992-1994 period and is slightly better in the 1998 and 2010 El Nino periods.

The 3rd model matches the observed 2010 El Nino – La Nina oscillation pretty well so far, indicating that the 2010 – 2011 UAH anomalies are following a predictable pattern.

Comparison of GISS LOTAs During 5 El Nino – La Nina Cycles

In this post I compare GISS LOTAs during 5 El Nino – La Nina cycles (2010, 1998, 19883, 1973 and 1970).

El Nino – La Nina Cycles

In a previous post I showed the Nino 34 SSTA cycles for 2010, 1998, 1983, 1973 and 1970 here. In this post, I want to see how GISS Land Ocean Temperature Anomalies (LOTA) vary over El Nino – La Nina cycles.  Here is my RClimate chart showing GISS anomalies for 6 months prior to cycle year,the cycle year and the 12 months after cycle year (30 month period).

Click chart to enlarge

GISS_NINO34_cycles

While the 2010 cycle is only partially complete, there are a number of interesting aspects in this chart. The average temperatures during the cycles have clearly risen with the latest cycle showing the highest maximum anomaly. All 5 cycles all have similar patterns, with a buildup in 6 months prior to cycle year. The maximum – minimum range for the 5 cycles are comparable, ranging from 0.45 (2010) to 0.60 (1998).

Here is a data summary of the 5 cycles.